BtaEX6096998 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000013245 | ITPR3
Description
Bos taurus inositol 1,4,5-trisphosphate receptor, type 3 (ITPR3), mRNA. [Source:RefSeq mRNA;Acc:NM_174370]
Coordinates
chr23:7730324-7731972:+
Coord C1 exon
chr23:7730324-7730468
Coord A exon
chr23:7730999-7731119
Coord C2 exon
chr23:7731773-7731972
Length
121 bp
Sequences
Splice sites
3' ss Seq
GTCCCGCCCCCTCTCCGCAGGTG
3' ss Score
13.59
5' ss Seq
GCGGTGAGG
5' ss Score
7.93
Exon sequences
Seq C1 exon
CTACGATTCCAACCTCAACGCCTCCCGAGACGACAAGAAGAACAAGTTCGCCAGCACCATGGAGTTCGTGGAGGACTACCTCAACAATGTGGTCAGCGAGGCCGTGCCCTTCGCCAACGAGGAGAAGAACAAACTCACCTTTGAG
Seq A exon
GTGGTCAGCCTGGCGCACAACCTCATCTACTTTGGCTTCTACAGCTTCAGCGAGCTGCTGCGGCTCACGCGCACTCTGCTGGGCATCATCGACTGCGTGCAGGCCTACGAGGACCCAGGCG
Seq C2 exon
GCAAGAATGTGCGGCGGTCCATCCAGGGCGTGGGGCACATGATGTCCACCATGGTGCTGAACCGCAAGCAGTCTGTCTTTGGTGGCCCCAGTTTGCCTGCTGGTGCCGGTGCCCCTGAGCCGCTGGACAGGAGCAAGTTTGAGGAGAATGAAGACATTGTGGTGATGGAGACCAAGCTGAAGATCCTGGAAATACTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013245-'20-21,'20-20,21-21=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.119
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAACAATGTGGTCAGCGAGG
R:
CAGCTTGGTCTCCATCACCAC
Band lengths:
244-365
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]