DreEX6049574 @ danRer10
Exon Skipping
Gene
ENSDARG00000061741 | itpr3
Description
inositol 1,4,5-trisphosphate receptor, type 3 [Source:ZFIN;Acc:ZDB-GENE-070605-1]
Coordinates
chr8:21275849-21277789:+
Coord C1 exon
chr8:21275849-21275993
Coord A exon
chr8:21276136-21276280
Coord C2 exon
chr8:21277602-21277789
Length
145 bp
Sequences
Splice sites
3' ss Seq
CTTCATTTGCATGTTTGTAGGTG
3' ss Score
7.44
5' ss Seq
GTGGTCAGT
5' ss Score
4.85
Exon sequences
Seq C1 exon
TTATGACTCTCACTTGGACTATTCACGAGACAATAAAAAGAACAAGTTTGCTAATACCATGGCTTTCATGGAGGAATACCTCAACAATGTGCTCATCGATGACCTGCCTTTTGCAAACGAGGAGAAAAACAAGCTAACGTATGAG
Seq A exon
GTGGTGAGCTTGGCGAGGCATCTCATCTACTTTGGCTTCTACAGCTTTTTCGAGCTCCTGAGATTGACTCGCACTCTTCTGGGAATCATAGACTGCACTCCGAGCAACGCTTCCATCAACCCACTGTTCAACGATGATGGCAGTG
Seq C2 exon
GTAAGAACGTCAGGCGCTCCATTCATGGCATGGGACAGATGATGTCTACCATGGTGCTTAACCGAAAACCATCTCTGTTCTCCGCTCCTGGTCGAACTGGAGACAGTCAAGTCGGCAGTAAAGACAGCATCGACACACAAGACATCACTGTCATGGACACCAAACTCAAGATTCTGGAGATTTTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000061741-'23-27,'23-26,25-27=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.127
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCACTTGGACTATTCACGAGACA
R:
CTGTCTCCAGTTCGACCAGGA
Band lengths:
242-387
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]