DreEX6064860 @ danRer10
Exon Skipping
Gene
ENSDARG00000011909 | itpr2
Description
inositol 1,4,5-trisphosphate receptor, type 2 [Source:ZFIN;Acc:ZDB-GENE-050419-192]
Coordinates
chr18:16017186-16019186:+
Coord C1 exon
chr18:16017186-16017333
Coord A exon
chr18:16018726-16018873
Coord C2 exon
chr18:16018999-16019186
Length
148 bp
Sequences
Splice sites
3' ss Seq
TCTGTCTGTCTCTGTCACAGGTG
3' ss Score
12.03
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
Exon sequences
Seq C1 exon
GTATGACTATGAGTTCAGAGACACGTCCAGAGAGGAGATGAAGAGAAAGTTTGCACCTACTATGCATTTTGTAGACGAATATCTCAAAGATGTGGTCAGTCAGCCTGATCCATTTGGAGACAGAGAGAAGAATGAACTGACCCTTGAG
Seq A exon
GTGGTCCACCTGGCACGTAACCTAGTCTACTTTGGCTTCTATAGCTTTAATGAGCTGTTGAGCCTCACGCGCACCCTGCTGGCCATTCTGGACATCGTCCAACCCACTTACACATTCATGTCCAAACTCAACAAGGGCCCAGAGGGAG
Seq C2 exon
GTAATAATGTCATGCGCACCATCCACGGTGTGGGTGAGATGGTGACTCAGATGGTGCTGAGCAGAGGCTTGATGATGCCCCACTGTCTGCCCGACGCTCAGCCAATCCACGGCAAGCAGATCTGTCTCCCTGACAACGAGAACGTCATGGTGATGGACACCAAGCTCAGGATTATTGAGATTCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000011909-'21-24,'21-22,22-24=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CAGAGACACGTCCAGAGAGGA
R:
AGATCTGCTTGCCGTGGATTG
Band lengths:
256-404
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]