MmuEX6007919 @ mm10
Exon Skipping
Gene
ENSMUSG00000030287 | Itpr2
Description
inositol 1,4,5-triphosphate receptor 2 [Source:MGI Symbol;Acc:MGI:99418]
Coordinates
chr6:146359294-146373238:-
Coord C1 exon
chr6:146373094-146373238
Coord A exon
chr6:146371253-146371403
Coord C2 exon
chr6:146359294-146359487
Length
151 bp
Sequences
Splice sites
3' ss Seq
ACGCGCCTCTCTCCACGCAGGTG
3' ss Score
11.27
5' ss Seq
GAAGTAAGA
5' ss Score
6.42
Exon sequences
Seq C1 exon
GTATGACTCCATTACAGACTCTTCCAGAAATGACATGAAGAGGAAGTTTGCCCTGACGATGGAATTTGTCGAAGAATATTTGAAAGAAGTTGTAAATCAACCATTTCCTTTTGGAGACAAAGAGAAAAATAAACTGACATTTGAG
Seq A exon
GTGGTTCACCTAGCCCGGAACCTCATCTATTTCGGATTCTACAGCTTCAGCGAGTTACTGCGGCTGACGAGAACTCTGCTGGCGATCCTAGACATCGTCCAGGCCCCCATGTCCTCATATTTCGAAAGATTAAGCAAGTTCCAAGATGGAA
Seq C2 exon
GCAACAATGTCATGAGGACCATCCACGGAGTGGGAGAGATGATGACACAGATGGTGCTCAGCAGAGGCTCCATCTTCCCAGTGAGTGTGCCCGACGCACAGCCCATCGTCCACCCCAGCAAGCAGGCGAGCCCCGGCGAGCAGGAGGATGTGACAGTGATGGACACCAAGCTGAAGGTTATCGAGATTTTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030287-'33-31,'33-30,34-31=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.213
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCCTGACGATGGAATTTGT
R:
TCACTGTCACATCCTCCTGCT
Band lengths:
256-407
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types