DreEX0040308 @ danRer10
Exon Skipping
Gene
ENSDARG00000014655 | itpr1a
Description
inositol 1,4,5-trisphosphate receptor, type 1a [Source:ZFIN;Acc:ZDB-GENE-070604-3]
Coordinates
chr6:39955249-39958434:+
Coord C1 exon
chr6:39955249-39955390
Coord A exon
chr6:39956444-39956591
Coord C2 exon
chr6:39958244-39958434
Length
148 bp
Sequences
Splice sites
3' ss Seq
CTGTCTTTTCTTTGCCCTAGGTG
3' ss Score
13.31
5' ss Seq
AAGGTCAGA
5' ss Score
6.8
Exon sequences
Seq C1 exon
TTATGATAATGATGGGACGTCAAGTGATGAAGTGAAAGAGCGCTTCTCTCAGACGATGGAGTTTGTGGAGAATTACCTGAGGGATGTTGTCTGCCAGAGTTTCCCGTTCTCTGATAAGGAGAAAAACAAACTCACTTTTGAG
Seq A exon
GTGGTGAACCTGGCAAGAAACCTGATCTATTTTGGTTTCTATAACTTCAGTGATCTGCTAAGGTTAACAAAAATCCTATTGGCAATCCTGGACTGTGTCCACATAAGCACTCCCTTCCACATCAAGCTGGATAGAGAACCCGGTAAAG
Seq C2 exon
GAAGTAACGTGATGCGCTCCATCCATGGGGTGGGAGAGCTGATGACACAGGTGGTGTTGAGGGGTGGGGGATTTCTGCCAGCCTCCAGCCACAATCCTCCTGACAGAGACGAAGTGAAAGCACAAAGTGAACCTCAGAAACAGGACATACTGGTGATGGACACTAAACTCAAGATCATCGAGATCCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000014655-'21-25,'21-24,23-25
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.083 A=0.000 C2=0.250
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCGCTTCTCTCAGACGATG
R:
TGTCCTGTTTCTGAGGTTCACT
Band lengths:
252-400
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]