GgaEX1030879 @ galGal3
Exon Skipping
Gene
ENSGALG00000014071 | ITPR2
Description
NA
Coordinates
chr1:69979058-69994336:-
Coord C1 exon
chr1:69994192-69994336
Coord A exon
chr1:69993149-69993299
Coord C2 exon
chr1:69979058-69979251
Length
151 bp
Sequences
Splice sites
3' ss Seq
CATTTTTGTTTTTGTCACAGGTG
3' ss Score
9.86
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
Exon sequences
Seq C1 exon
GTATGACTCTTTCACAGATTCTTCAAGAAATGAAATGAAGAGGAAATTTGCACTAACTATGGAATTTGTGGAAGAGTACTTGAAAGAAGTTGTAAATCAGCCTTTTCCTTTTGGTGACAAAGAGAAAAATAAACTTACATTTGAG
Seq A exon
GTGGTACATCTAGCTCGAAATCTCATATACTTTGGCTTTTATAGTTTTAGTGAGCTTCTCAGACTCACCCGGACACTTCTGGCAATTCTAGATATTGTTCAAGTTCCTATGTCATCATACTTTGAAAGGTTAAGCAAGTTTCAGGATGGAG
Seq C2 exon
GAAACAATGTTATGAGAACCATCCATGGTGTTGGAGAGATGATGACCCAAATGGTACTAAGCAGAGGATCTATATTTCCCATCAGTGTCCCTGATGTACAGCCAAGCATTCACCCAAGCAAGCAAGCCACCACCTCAGAGAATGAAGATGTGATTGTAATGGACACCAAATTGAAAATCATTGAGATTTTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014071-'22-26,'22-25,23-26=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.123
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TGCACTAACTATGGAATTTGTGGA
R:
TCATTCTCTGAGGTGGTGGCT
Band lengths:
242-393
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]