BtaEX6023545 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000002313 | ITPR2
Description
inositol 1,4,5-trisphosphate receptor type 2 [Source:RefSeq peptide;Acc:NP_776794]
Coordinates
chr5:83575510-83587120:+
Coord C1 exon
chr5:83575510-83575670
Coord A exon
chr5:83584183-83584324
Coord C2 exon
chr5:83586959-83587120
Length
142 bp
Sequences
Splice sites
3' ss Seq
TCCCTTTCTTTTTATGATAGGTT
3' ss Score
9.62
5' ss Seq
CAGGTGACT
5' ss Score
6.6
Exon sequences
Seq C1 exon
ATTGGAACTTGCCAGACAAAAGAAGATAAAGAAGCATTTGCCATTGTGTCTGTCCCACTGTCCGAGGTCCGAGATTTAGACTTTGCCAATGATGCAAATAAAGTGCTGGCGACTACAGTTAAAAAGCTGGAAAATGGCACAATAACCCAGAATGAAAGGAG
Seq A exon
GTTTGTAACCAAGTTACTGGAAGACCTTATCTTCTTTGTTGCTGATGTACCTAACAACGGACAAGACGTTCTAGACGTGCTTATCACCAAGCCAAACCGAGAACGTCAGAAGTTAATGAGGGAACAGAACATATTGGCACAG
Seq C2 exon
GTATTTGGGATTCTTAAAGCACCCTTTAAGGAGAAAGCAGGAGAAGGCTCAATGTTGAGACTGGAAGATCTGGGGGATCAAAGATATGCCCCCTATAAGTACATGCTGAGGCTGTGCTACCGTGTGCTGAGACATTCGCAGCAGGACTACCGGAAAAATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002313-'13-15,'13-14,14-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.037 A=0.021 C2=0.000
Domain overlap (PFAM):
C1:
PF0281514=MIR=PD(7.5=27.8)
A:
PF0136516=RYDR_ITPR=PU(22.3=95.8)
C2:
PF0136516=RYDR_ITPR=FE(25.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGTCCGAGGTCCGAGATTT
R:
GGTAGTCCTGCTGCGAATGTC
Band lengths:
256-398
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]