GgaEX6002985 @ galGal4
Exon Skipping
Gene
ENSGALG00000014071 | ITPR2
Description
inositol 1,4,5-trisphosphate receptor, type 2 [Source:HGNC Symbol;Acc:HGNC:6181]
Coordinates
chr1:67990409-67994152:-
Coord C1 exon
chr1:67993992-67994152
Coord A exon
chr1:67991350-67991491
Coord C2 exon
chr1:67990409-67990567
Length
142 bp
Sequences
Splice sites
3' ss Seq
GGATTTTCTATTCATTCTAGATT
3' ss Score
7.3
5' ss Seq
CAGGTATAT
5' ss Score
7.88
Exon sequences
Seq C1 exon
ATCGGGACGTGCCAAACAAAAGAGGACAAGGAGGCTTTTGCCATTGTATCAGTTCCTCTGTCTGAGGTCAGAGACTTGGACTTTGCCAATGATGCGAACAAAGTCTTAGCATCAACTGTTAAAAAGCTGGAGAATGGAACAATAACCCAGAATGAAAGGAG
Seq A exon
ATTTGTGACCAAGTTACTAGAAGATCTGATTTTCTTTGTGTCTGATGTGCCTAACAATGGGCAGGAAGTTTTGGATGTGGTCATTACTAAGCCAAACCGGGAACGACAAAAATTAATGCGGGAACAAAATATTTTGGCTCAG
Seq C2 exon
ATATTCGGGATCCTCAAAGCTCCTTTTAAGGACAAAGGTGAAGGATCAATGCTGAGACTTGAAGACCTAGGTGACCAGAGATATGCCCCATACAAATACATGTTAAGGTTGTGTTACAGAGTTCTCAGACATTCCCAGCAGGACTATAGGAAGAACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014071-'17-23,'17-22,18-23=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.037 A=0.021 C2=0.000
Domain overlap (PFAM):
C1:
PF0281514=MIR=PD(7.4=27.8),PF032168=Rhabdo_ncap_2=FE(44.2=100)
A:
PF032168=Rhabdo_ncap_2=FE(39.2=100),PF0136516=RYDR_ITPR=PU(26.9=95.8)
C2:
PF032168=Rhabdo_ncap_2=PD(5.8=13.2),PF0136516=RYDR_ITPR=FE(30.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACGTGCCAAACAAAAGAGG
R:
GGGGCATATCTCTGGTCACCT
Band lengths:
246-388
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]