MmuEX6007912 @ mm10
Exon Skipping
Gene
ENSMUSG00000030287 | Itpr2
Description
inositol 1,4,5-triphosphate receptor 2 [Source:MGI Symbol;Acc:MGI:99418]
Coordinates
chr6:146382684-146390945:-
Coord C1 exon
chr6:146390785-146390945
Coord A exon
chr6:146385875-146386016
Coord C2 exon
chr6:146382684-146382845
Length
142 bp
Sequences
Splice sites
3' ss Seq
TGTGTGTGTGTGTGTGATAGGTT
3' ss Score
10.86
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
ATTGGGACCTGCCAGACCAAGGAAGACAAAGAAGCCTTTGCCATTGTGTGCGTCCCGCTGTCTGAGGTCCGTGACTTGGACTTTGCCAACGATGCCAACAAAGTGCTGGCCACCACGGTGAAGAAGCTGGAGAATGGCAGCATCACACAGAACGAGAGGAG
Seq A exon
GTTTGTGACTAAGTTGTTGGAAGACCTCATTTTCTTTGTGGCTGATGTGACCAACAATGGGCAGGACGTTCTGGATGTGGTCATCACCAAGCCAAACCGGGAACGGCAGAAACTAATGAGGGAACAGAATATACTGGCACAG
Seq C2 exon
GTGTTTGGGATCCTTAAAGCACCTTTCAAGGAGAAGGCTGGAGAAGGTTCGATGCTGAGGCTGGAGGACCTGGGCGACCAGCGCTACGCCCCGTACAAGTATGTGCTGCGTCTCTGCTACCGTGTGCTGCGGCATTCGCAGCAGGACTACAGGAAGAACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030287-'22-21,'22-20,23-21
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.037 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0281514=MIR=PD(20.3=27.8)
A:
PF0136516=RYDR_ITPR=PU(22.2=95.8)
C2:
PF0136516=RYDR_ITPR=FE(25.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGCCTTTGCCATTGTGTGC
R:
ACGCAGCACATACTTGTACGG
Band lengths:
242-384
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types