RnoEX0045417 @ rn6
Exon Skipping
Gene
ENSRNOG00000001804 | Itpr2
Description
inositol 1,4,5-trisphosphate receptor, type 2 [Source:RGD Symbol;Acc:69649]
Coordinates
chr4:180680893-180689488:-
Coord C1 exon
chr4:180689328-180689488
Coord A exon
chr4:180684237-180684378
Coord C2 exon
chr4:180680893-180681054
Length
142 bp
Sequences
Splice sites
3' ss Seq
TCTTTTCCTGTGTGTGATAGGTT
3' ss Score
10.43
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
ATTGGGACCTGCCAGACCAAGGAAGACAAAGAAGCCTTTGCCATCGTGTGCGTCCCGCTGTCTGAGGTCCGAGACCTGGACTTTGCCAACGATGCCAACAAAGTATTGGCCACCACGGTGAAGAAGCTGGAGAATGGCAGCATCACCCAGAATGAGAGGAG
Seq A exon
GTTTGTGACTAAGTTGTTGGAAGACCTCATTTTCTTTGTGGCTGATGTGACCAACAACGGACAGGATGTTCTGGATGTGGTCATCACCAAGCCCAACCGGGAACGGCAAAAACTAATGAGGGAACAGAATATTCTGGCACAG
Seq C2 exon
GTGTTTGGGATCCTTAAAGCCCCTTTCAAGGAGAAGGCTGGGGAAGGCTCGATGCTGAGGCTGGAGGACCTGGGCGACCAGCGCTATGCCCCGTACAAGTACGTGCTGCGTCTCTGCTACCGCGTGCTGCGGCATTCGCAGCAGGACTACAGGAAGAACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001804-'13-14,'13-13,14-14
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.037 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0281514=MIR=PD(7.5=27.8)
A:
PF0136516=RYDR_ITPR=PU(22.2=95.8)
C2:
PF0136516=RYDR_ITPR=FE(25.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACCTGGACTTTGCCAACGAT
R:
CCTGTAGTCCTGCTGCGAATG
Band lengths:
242-384
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]