DreEX6064867 @ danRer10
Exon Skipping
Gene
ENSDARG00000011909 | itpr2
Description
inositol 1,4,5-trisphosphate receptor, type 2 [Source:ZFIN;Acc:ZDB-GENE-050419-192]
Coordinates
chr18:16008313-16011256:+
Coord C1 exon
chr18:16008313-16008476
Coord A exon
chr18:16010881-16011022
Coord C2 exon
chr18:16011098-16011256
Length
142 bp
Sequences
Splice sites
3' ss Seq
TGTTAAATGTATCTGTTTAGGTT
3' ss Score
8.8
5' ss Seq
CAGGTTTGA
5' ss Score
5.11
Exon sequences
Seq C1 exon
ATCGGCACCTGCCACATGAAGGAGGACAAGGAGGCATTCTCCATTAATTCTGTCCCCCTCTCTGAGGTCCGAGACTTGGACTTTGCCAATGATGCCAACAAGGTTCTGGAGTCATTTGTACGTATATTGGGGATCAGCAACTATGCGGCTGCAAATGAACGCAG
Seq A exon
GTTTACTATTAAGCTGTTGGAGGATCTGATCTTCTTTGTGGGTGATGTGCCAAACAATGGACAGGATGTTCTGTCCGTAGTCATATCGAACCCCAACAGAGAGAGACAGAAACTCATGAGAGAGCAAAACATCCTGGCACAG
Seq C2 exon
ATCTTTGGGATTCTGAAAGCCCCATTTTCTGAGATCAAAGACTCGCCCATGCCGAAGCTGGAAGATGTGGGGGAGCAGCGCAACTCTGCATTTAAGTACATGCTACAGTTGTGCTACAGAACCCTCCGCCATTCACAACAAGACTACCGAAAGAATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000011909-'12-15,'12-14,13-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.021 C2=0.038
Domain overlap (PFAM):
C1:
PF0281514=MIR=PD(7.9=27.3)
A:
PF0136516=RYDR_ITPR=PU(22.3=95.8)
C2:
PF0136516=RYDR_ITPR=FE(25.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGAGGTCCGAGACTTGGACT
R:
TCTTGTTGTGAATGGCGGAGG
Band lengths:
246-388
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]