DreEX6023191 @ danRer10
Exon Skipping
Gene
ENSDARG00000014655 | itpr1a
Description
inositol 1,4,5-trisphosphate receptor, type 1a [Source:ZFIN;Acc:ZDB-GENE-070604-3]
Coordinates
chr6:39948224-39950281:+
Coord C1 exon
chr6:39948224-39948384
Coord A exon
chr6:39949886-39950027
Coord C2 exon
chr6:39950123-39950281
Length
142 bp
Sequences
Splice sites
3' ss Seq
TCATCCATCCTCACACACAGGTC
3' ss Score
7.63
5' ss Seq
CAGGCACTT
5' ss Score
0.42
Exon sequences
Seq C1 exon
ATAGGAACGTCTCCTCTGAAGGAAGATAAAGAGGCGTTTGCTATAGTACCAGTCTCTCCAGCTGAGGTTCGAGATCTGGATTTTGCTAATGATGCTAGTAAAGTGTTGGCTTCCATTGCTGCCAAACTGGAGAAGGGCACCATTACCCAGAATGAGAGGAG
Seq A exon
GTCAGTGACGAAGCTGTTGGAGGATCTGGTGTATTTTGTGGTGGACATACCCAGCAGTGCTCAAGATGTGCTGGAGATCACAGTCAACAAACCCAACAGAGAGCGACAGAAACTCATGAGAGAGCAGAACATTCTTAAACAG
Seq C2 exon
ATCTTCAAGCTGCTGCAGGCGCCATTTACAGACAGCGGGGACGGCCCTATGTTGCGATTAGAAGAGCTCGCAGACCAGCGTCATGCACCCTTTCGACACATTTGCAGACTCTGTTACAGAGTCCTACGTTACTCACAACAGGACTATCGCAAAAATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000014655-'14-18,'14-16,15-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.037 A=0.042 C2=0.015
Domain overlap (PFAM):
C1:
PF0281514=MIR=PD(7.5=27.8)
A:
PF0136516=RYDR_ITPR=PU(22.3=95.8)
C2:
PF0136516=RYDR_ITPR=FE(25.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTGAGGTTCGAGATCTGGA
R:
TGCGATAGTCCTGTTGTGAGT
Band lengths:
253-395
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]