BtaEX6023754 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020715 | PIK3C2G
Description
phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 gamma [Source:HGNC Symbol;Acc:HGNC:8973]
Coordinates
chr5:92227058-92266935:-
Coord C1 exon
chr5:92266778-92266935
Coord A exon
chr5:92260161-92260275
Coord C2 exon
chr5:92227058-92227160
Length
115 bp
Sequences
Splice sites
3' ss Seq
TTATTCAATCCTGTTTTTAGCTA
3' ss Score
7.25
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
Exon sequences
Seq C1 exon
AATAAGAGAAACATATCATGCCGCTGACATGGATTCCAATTCTGGGAAGATTTGGAGCACGACTACAGCATTTCCATATAAGCTCTTTTCTAATACTAAGTTTAATATAAATATTTTTACTGATAACTCAACAAAAGGACTTCATTTTATCCCATGTG
Seq A exon
CTAATTATCTTGTCAAAGACCTAATTGCCGAAATTCTACATTTTTGCATGAATGACCAGTTATTCCCCAGAGATCATCTCTTAAGTATATGTGGCCATGAAGAATTTTTACAAAA
Seq C2 exon
TGATCACTATTTGGGAAGCCACAGAGTATTTCAGAAAAATAAATCTGTTATTCAACTTCATCTACAGAAAAAGAGAGACACTCCAGGAACATTATCTCGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020715-'2-3,'2-2,4-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.171
Domain overlap (PFAM):
C1:
PF0079413=PI3K_rbd=PU(33.7=61.1)
A:
PF0079413=PI3K_rbd=FE(38.8=100)
C2:
PF0079413=PI3K_rbd=PD(26.5=74.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCATGCCGCTGACATGGATTC
R:
TCGAGATAATGTTCCTGGAGTGT
Band lengths:
243-358
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]