RnoEX6015475 @ rn6
Exon Skipping
Gene
ENSRNOG00000034228 | Pik3c2g
Description
phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 gamma [Source:RGD Symbol;Acc:620231]
Coordinates
chr4:173776725-173794806:+
Coord C1 exon
chr4:173776725-173776882
Coord A exon
chr4:173780306-173780420
Coord C2 exon
chr4:173794704-173794806
Length
115 bp
Sequences
Splice sites
3' ss Seq
TATCCACTTTTGTTTTGCAGCTA
3' ss Score
10.3
5' ss Seq
GACGTAAGT
5' ss Score
10.93
Exon sequences
Seq C1 exon
AATAAGAGGACTATATCATGCAAGTGACACTAATTCCAATTCCGGAAAGATCTGGGCCATCACCACAGCCTATCCATCTCGGCTCTTCGCTGACACCCAGTTCAGAGTTAAAATTTCCACTGATAACTCGGCACAACTTCTTCTTCTTAAGCCACCCG
Seq A exon
CTAATTATCTTGTCAAAGACCTAATTGCCGAAATTCTACTTTTATGTGCAAATGAGCAGCTTTCCCCCAAAGAGTATCTTCTAAGTATATGCGGTTCTGAGGAATTTTTACAGAC
Seq C2 exon
GGATCACTGTCTAGGGAGCCACAAAATATTTCAGAAAAGTAAATCTGTCATTCAACTCCATCTCCAGAGAAGCAGGGACACTCCAGGAAAATTATCCCGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000034228-'5-5,'5-4,6-5=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.200
Domain overlap (PFAM):
C1:
PF0079413=PI3K_rbd=PU(32.3=57.4)
A:
PF0079413=PI3K_rbd=FE(39.6=100)
C2:
PF0079413=PI3K_rbd=PD(27.1=74.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGACTATATCATGCAAGTGACACT
R:
TTTCCTGGAGTGTCCCTGCTT
Band lengths:
242-357
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]