MmuEX6007665 @ mm9
Exon Skipping
Gene
ENSMUSG00000030228 | Pik3c2g
Description
phosphatidylinositol 3-kinase, C2 domain containing, gamma polypeptide [Source:MGI Symbol;Acc:MGI:1203730]
Coordinates
chr6:139578239-139584261:+
Coord C1 exon
chr6:139578239-139578396
Coord A exon
chr6:139582198-139582312
Coord C2 exon
chr6:139584090-139584261
Length
115 bp
Sequences
Splice sites
3' ss Seq
TATACACTTTTGTTTTTCAGCTA
3' ss Score
9.17
5' ss Seq
GATGTAAGT
5' ss Score
9.11
Exon sequences
Seq C1 exon
GATAAGAGAATCGTACCATGCAAGTGACATTAATTCCAATTCTGGGAAGATCTGGGCCATCACCACAGCCTATCCATCTCGGCTCTTCGCTGACACCAAATTCAGAGTAAAAATTTCTATTGATAACTCAGCCCAACTCCTCCTTCTTATGCCACACG
Seq A exon
CTAATTATCTTGTCAAAGACCTAATTGCTGAAATTCTACTTTTATGTGCAAATGAGCCGCTTTCCCCCAAAGAGTATCTTCTAAGTGTATGCGGTTCTGAGGAATTTTTACAGAT
Seq C2 exon
CATTAACTACCCTGAGCTACTACCTCCCACCAGTCTGGATGACAATCATCAAGAAATCAAACAACAAATGTTAGAGAGGAAGTGGAGAGGATTATTATTCCTTACTCCTTATTCACTGCTGGCGAGAGTGCAAGTTAATGCAGACGTTGTGGAAGGCAGTGTGAAGACTTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030228-'2-3,'2-2,3-3=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0079413=PI3K_rbd=PU(32.3=57.4)
A:
PF0079413=PI3K_rbd=FE(39.6=100)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCTGGGAAGATCTGGGCCAT
R:
TTAACTTGCACTCTCGCCAGC
Band lengths:
257-372
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: