DreEX0006792 @ danRer10
Exon Skipping
Gene
ENSDARG00000099803 | PIK3C2G
Description
phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 gamma [Source:HGNC Symbol;Acc:HGNC:8973]
Coordinates
chr18:50918493-50919458:-
Coord C1 exon
chr18:50919316-50919458
Coord A exon
chr18:50919119-50919233
Coord C2 exon
chr18:50918493-50918604
Length
115 bp
Sequences
Splice sites
3' ss Seq
TGTTTCCCTGTGTGTATCAGTGC
3' ss Score
7.44
5' ss Seq
AAGGTGATC
5' ss Score
4.41
Exon sequences
Seq C1 exon
GCTGCTGTGTGAGCGTGTTCCCGCTGCTGCAGTGCTGTGGGCTCCTGTGGCCCCTGTGCAGGAGAGTCTGCTGGGCTCCGCAGAGCTGCTCTTCAGGGTGTGTGTGCCGTGGCTGCCTGAGCCTCTGCTGTATCGCAGCCAGT
Seq A exon
TGCACTGGCGGGTGCAGGAGCTGCTGGAGGCCGTTCTGCTGACTCTGGATCAGTCCGCCGCTGACGCTCCGCTGTACCTGCTCAAACTCTGCAGCTCAGATCAGTTCCTCAGAAG
Seq C2 exon
TGATGAAGTATTGGGCTATCATGAGTGCATCCAGGCGTATCACAGGTTTTCTGCTGATGTTCCTGTGCGTTTGGTGCTCAGAGACTCCATCAGGAAAACCCTCAGTCCAGAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000099803_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGTGTGAGCGTGTTCCC
R:
AGGGTTTTCCTGATGGAGTCTCT
Band lengths:
242-357
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]