GgaEX6002849 @ galGal3
Exon Skipping
Gene
ENSGALG00000013117 | PIK3C2G
Description
NA
Coordinates
chr1:66151507-66162312:+
Coord C1 exon
chr1:66151507-66151664
Coord A exon
chr1:66154405-66154516
Coord C2 exon
chr1:66162210-66162312
Length
112 bp
Sequences
Splice sites
3' ss Seq
CTTGCTATCTTTATTTACAGCTG
3' ss Score
9.92
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
Exon sequences
Seq C1 exon
GATAAGAAACACCTACCCTGCTTGTGATTTGAAGACAAACACTGGGAAGATCTGGAGTGTTGCAACAAAGTTCCCAGACCACATTCTGGGTAAAATAAGACTCAGAATCAGCATCTGGACAGATTCTTCACCATCTCCTCTGCTTCTTACACAACATG
Seq A exon
CTGGATGTATCACTCACGACTTAATTGTGGAGATCCTCCGTTGCACAAATCAATACCCGGTCCATGAAGAATGTCTTCTAAGTGTTTGTGGCTCTGATGAATTCTTACAAAA
Seq C2 exon
CAATCATAGTTTGGGCAACCACGAGAGTCTTCGCAAGGCAACCACTGACATTCATCTTCATCTACACAGCACTACAAATTTGAAGCAAAGTTTGGCTCGAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013117-'1-2,'1-1,2-2=AN
Average complexity
A_S
Mappability confidence:
83%=100=75%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0079413=PI3K_rbd=PU(34.0=61.1)
A:
PF0079413=PI3K_rbd=FE(38.1=100)
C2:
PF0079413=PI3K_rbd=PD(26.8=74.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAACACCTACCCTGCTTGTGA
R:
ACTCGAGCCAAACTTTGCTTCA
Band lengths:
254-366
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]