BtaEX6023756 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020715 | PIK3C2G
Description
phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 gamma [Source:HGNC Symbol;Acc:HGNC:8973]
Coordinates
chr5:92194303-92218510:-
Coord C1 exon
chr5:92218447-92218510
Coord A exon
chr5:92200029-92200151
Coord C2 exon
chr5:92194303-92194336
Length
123 bp
Sequences
Splice sites
3' ss Seq
ATCAATCTTTTCATCTACAGCAA
3' ss Score
8.25
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
Exon sequences
Seq C1 exon
ACAGTGTCTCTCAACAGTAATCCAAAAATATGACTCCCACCTGAAATACTTATTGAAAACTCAG
Seq A exon
CAAAATGTGGACAATGTTATTGAAGAAGTAAAAAGTATATGCAGTGTTCTGGGATGTGTGGAGACCAAACAAATTACAGATGCTATAAATGAACTAAATCTTATTCTTCAGAGAAAACCAAAG
Seq C2 exon
AATCTTCATCAAAATTCAGACACTTCAGCAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020715-'7-7,'7-6,8-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGTGTCTCTCAACAGTAATCCA
R:
CTTTTGCTGAAGTGTCTGAATTTTGA
Band lengths:
98-221
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]