HsaEX6065386 @ hg38
Exon Skipping
Gene
ENSG00000139144 | PIK3C2G
Description
phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 gamma [Source:HGNC Symbol;Acc:HGNC:8973]
Coordinates
chr12:18325035-18343360:+
Coord C1 exon
chr12:18325035-18325098
Coord A exon
chr12:18338426-18338548
Coord C2 exon
chr12:18343327-18343360
Length
123 bp
Sequences
Splice sites
3' ss Seq
GTGAATCTTGTTATCTACAGGAA
3' ss Score
8.9
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
Exon sequences
Seq C1 exon
ACAATGTCTCTTAACACTCATCAGAAAATATGACTTCCACCTGAAATACCTATTGAAAACCCAG
Seq A exon
GAAAACGTGTATAATATTATTGAAGAAGTTAAAAAAATATGCAGTGTTCTAGGGTGTGTGGAAACCAAACAAATTACAGATGCAGTAAATGAACTAAGTCTAATTCTTCAGAGAAAAGGAGAG
Seq C2 exon
AATTTTTATCAAAGTTCAGAGACTTCAGCAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000139144-'17-17,'17-16,18-17=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAATGTCTCTTAACACTCATCAGA
R:
CTTTTGCTGAAGTCTCTGAACTT
Band lengths:
98-221
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains