GgaEX7000649 @ galGal4
Exon Skipping
Gene
ENSGALG00000013117 | PIK3C2G
Description
phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 gamma [Source:HGNC Symbol;Acc:HGNC:8973]
Coordinates
chr1:64166804-64174329:+
Coord C1 exon
chr1:64166804-64166867
Coord A exon
chr1:64168611-64168736
Coord C2 exon
chr1:64174302-64174329
Length
126 bp
Sequences
Splice sites
3' ss Seq
TTTTCTTTTCCTGCTGTCAGCCA
3' ss Score
6.54
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
Exon sequences
Seq C1 exon
ACAGAACCTTTTCGCAGCTCTTAGGAAATACAGAGGTCAAGTGGAGCACCTTTTGCAAAATGAG
Seq A exon
CCATACAAAGTTGATTATGTGATTGAAGTAGCTAAAGCAATCTGCAGTGTCCTCTGCTTCGTGGAGACCAGACAAATTACCAGTGCAGTCAAGAAACTACATGCAGTGCCGTTGGTGAAAACACAG
Seq C2 exon
GATTCACTTCAACATGTGGAAGCACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013117-'7-8,'7-6,8-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGAACCTTTTCGCAGCTCT
R:
TGTGCTTCCACATGTTGAAGTGA
Band lengths:
90-216
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]