RnoEX0065962 @ rn6
Exon Skipping
Gene
ENSRNOG00000034228 | Pik3c2g
Description
phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 gamma [Source:RGD Symbol;Acc:620231]
Coordinates
chr4:173816404-173830267:+
Coord C1 exon
chr4:173816404-173816463
Coord A exon
chr4:173820437-173820559
Coord C2 exon
chr4:173830234-173830267
Length
123 bp
Sequences
Splice sites
3' ss Seq
TGTGATCTTGTCATCTACAGCCA
3' ss Score
8.94
5' ss Seq
CAGGTAAAT
5' ss Score
8.76
Exon sequences
Seq C1 exon
GAAGATGTGGAGGAGAAACCTCTGTCATCCATGTTTTCCTGTGGCCGACACCCTCCTCAG
Seq A exon
CCACATGGGAATGACATTATTGAAGATGTTAGAAACATATGCAGTGTTCTGGGGTGTATTGAAACCAAACAAGTTTCAGATGCAGTAAAAGAACTAACTCTAATTCTGCAGAGACCATCACAG
Seq C2 exon
AATTTTCATCAGAATTCAGAGACTTCAAAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000034228-'13-13,'13-12,14-13
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.500 A=0.073 C2=0.083
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]