DreEX6067014 @ danRer10
Exon Skipping
Gene
ENSDARG00000099803 | PIK3C2G
Description
phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 gamma [Source:HGNC Symbol;Acc:HGNC:8973]
Coordinates
chr18:50917801-50918234:-
Coord C1 exon
chr18:50918171-50918234
Coord A exon
chr18:50917951-50918067
Coord C2 exon
chr18:50917801-50917831
Length
117 bp
Sequences
Splice sites
3' ss Seq
CATTTTTTGTGTGTGTTCAGACA
3' ss Score
7.85
5' ss Seq
CTGGTACAA
5' ss Score
2.41
Exon sequences
Seq C1 exon
GTGGAGTCTGCAGGAGAAACTGGACGTCTACAGCAGTGCAGTGACCCGGCTGATGAGAAACCCG
Seq A exon
ACAGGTGAAGGTGTGTGTGTGCTGCTGGACAGTGCTGTAGGTGTGTGTGCTCAGCTCTGTGTCTCTACAGTGGAGATGGAGGAAGCCGCCGGCCGGCTGAAGAGCTTCACTAAACTG
Seq C2 exon
ACTCTGGACCACAGCGGTGACCTTCACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000099803-'8-7,'8-6,9-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGAGTCTGCAGGAGAAACTG
R:
GTGAAGGTCACCGCTGTGG
Band lengths:
91-208
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]