BtaEX6023933 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000011761 | LRP6
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1MDE1]
Coordinates
chr5:98166007-98171227:+
Coord C1 exon
chr5:98166007-98166143
Coord A exon
chr5:98166790-98166887
Coord C2 exon
chr5:98170933-98171227
Length
98 bp
Sequences
Splice sites
3' ss Seq
TTGGTTTTCTTTCCTTTTAGATT
3' ss Score
11.43
5' ss Seq
CAGGTAATA
5' ss Score
8.55
Exon sequences
Seq C1 exon
GAATGTCTCGTGGTAAATCAATGATCAGTTCCCTCAGTATCATGGGGGGGAGCAGTGGACCCCCTTATGACCGAGCCCATGTCACAGGAGCATCGTCAAGTAGTTCATCAAGCACCAAAGGCACTTACTTCCCTGCA
Seq A exon
ATTTTGAACCCTCCGCCATCCCCGGCCACAGAGCGATCACATTACACCATGGAATTTGGTTATTCTTCTAACAGCCCTTCCACTCACAGGTCCTACAG
Seq C2 exon
CTACAGGCCGTACAGCTACCGGCACTTTGCGCCCCCCACCACGCCCTGCAGCACAGATGTGTGTGACAGTGACTATGCTCCTAGCCGAAGGATGACCTCAGTGGTGACGGCCAAGGGCTACACTAGTGACTTGAACTATGACTCAGAGCCTGTGCCCCCACCTCCCACGCCCCGAAGCCAGTACTTGTCAGCAGAAGAGAACTATGAAAGCTGCCCGCCTTCTCCATACACGGAGAGGAGCTACTCTCATCACCTCTACCCACCGCCACCCTCTCCCTGTACAGACTCCTCCTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011761-'29-41,'29-40,30-41=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.457 A=0.667 C2=0.714
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATGACCGAGCCCATGTCACA
R:
TGAGGTCATCCTTCGGCTAGG
Band lengths:
172-270
Functional annotations
There are 1 annotated functions for this event
PMID: 14731402
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: alanine scanning, mutation analysis, mutation disrupting interaction. ELM ID: ELMI002902; ELM sequence: PPPSPA; Overlap: FULL
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]