DreEX0043756 @ danRer10
Exon Skipping
Gene
ENSDARG00000006921 | lrp5
Description
low density lipoprotein receptor-related protein 5 [Source:ZFIN;Acc:ZDB-GENE-050518-2]
Coordinates
chr25:10546344-10552539:-
Coord C1 exon
chr25:10552397-10552539
Coord A exon
chr25:10552211-10552308
Coord C2 exon
chr25:10546344-10550366
Length
98 bp
Sequences
Splice sites
3' ss Seq
GTTGTCTGTTCTATGTATAGATG
3' ss Score
7.22
5' ss Seq
CAGGTATGT
5' ss Score
9.8
Exon sequences
Seq C1 exon
GGATATCATGTGGGAAGTCAATGATGAGCTCAGTGAGTCTGATGGGCAGCAGTAGCAGCGGAGCTCCTCTCTATGACCGAAACCATGTGACAGGAGCTTCATCCAGCAGCTCTTCCAGCACCAAAGGAGCATTTTACCCACAG
Seq A exon
ATGCTCAACCCTCCTCCATCGCCAGCCACGGATCGCTCACTTTACAACGCAGAAGTTTTTTATTCATCCAACAGCCCGTCAACAACCAGGTCTTACAG
Seq C2 exon
ACCATATCTGATGCGAGGGGTCGCGCCCCCCACCACCCCCTGCAGCACAGACGTGTGCGACAGCGACTACACCACCAGCCGCTGGAAAAGCAACAAGTACTACATGGACCTCAATTCAGACTCTGACCCCTACCCTCCACCCCCGACCCCCCGCAGCCAGTACATGTCAGCAGAGGAGAGCTGTCCACCTTCACCCTCCACCGAGCGCAGCTACTTCCACCTGTGCCCGCCGCCCCCCTCGCCCTGCACAGACTCCTCATGACACCCGGCCACCTGCCGCCCTCTGTAAATACTTTTAAATAGCTCCAAAAAGAAGACACTAAAGATTTTATTTTATTCTCCCATACACACACACACACACACACACTCACACACGCTTTTGTTCAAGAATCATTTCAGCTTTTTGAGAAGAGGAGCAGGACATTTTCGGCCTCAGTTTTAGATGTACAGTGGACGTGATTGGACGAGTGAATTATATTATGACATTATTTTTTAGATAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000006921-'25-29,'25-28,26-29
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.438 A=0.485 C2=0.460
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCCAGCACCAAAGGAGCAT
R:
AGGGTAGGGGTCAGAGTCTGA
Band lengths:
168-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]