RnoEX0050749 @ rn6
Exon Skipping
Gene
ENSRNOG00000015911 | Lrp5
Description
LDL receptor related protein 5 [Source:RGD Symbol;Acc:1309329]
Coordinates
chr1:218816841-218823693:-
Coord C1 exon
chr1:218823554-218823693
Coord A exon
chr1:218820026-218820123
Coord C2 exon
chr1:218816841-218817297
Length
98 bp
Sequences
Splice sites
3' ss Seq
CCCCTGCTCACTCTCCTCAGATC
3' ss Score
11.11
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
Exon sequences
Seq C1 exon
GCATCCCGTGCAGCAAGTCCATGATGAGTTCTGTGAGCCTGGTGGGGGGGCGGGGCAGCGTGCCCCTCTATGACCGGAATCACGTCACCGGGGCCTCATCCAGCAGTTCATCCAGCACAAAGGCCACACTCTATCCACCG
Seq A exon
ATCCTGAACCCACCACCGTCCCCGGCCACAGACCCCTCCCTGTACAACATGGACATGTTTTATTCTTCAAACATCCCATCCACTGCCAGACCATACAG
Seq C2 exon
GCCCTACATCATTCGAGGTATGGCACCCCCAACAACACCTTGCAGCACAGACGTGTGTGACAGCGACTACAGCACCAGTCGCTGGAAGACCAGCAAGTACTACCTGGACTTGAATTCGGACTCAGACCCCTACCCGCCCCCGCCCACTCCCCACAGCCAGTACCTGTCTGCAGAGGATAGCTGTCCACCCTCTCCTGTCACTGAGAGAAGCTACTGCCACCTCTTCCCACCCCCTCCATCCCCCTGCACGGACTCGTCCTGACCTCGGCCGTCCACCCCGGCCTCGCTGCCTCCCTGTAAATATTTTTAAATATGAACAAAGGAAAAATATATTTTATGATTTAAAAAATAAATATAATTGGGATTTTTAAGAAGTGAGAAATGTGAGCGGTGAAGGGGTGGGCAGGGCTGGGAAAACTTTGTACAGTGGAGAAAATATTTATAAACTTAATTTTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015911_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.383 A=0.273 C2=0.345
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTCATCCAGCAGTTCATCC
R:
GGTAGGGGTCTGAGTCCGAAT
Band lengths:
182-280
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]