BtaEX6103997 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000005903 | LRP5
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1N1K8]
Coordinates
chr29:46564117-46573460:+
Coord C1 exon
chr29:46564117-46564256
Coord A exon
chr29:46571519-46571616
Coord C2 exon
chr29:46573005-46573460
Length
98 bp
Sequences
Splice sites
3' ss Seq
CTCGCTTGGCCTCCCCACAGATC
3' ss Score
10.44
5' ss Seq
CAGGTACGG
5' ss Score
10.88
Exon sequences
Seq C1 exon
GCATTTCGTGTGGCAAGTCCATGATGAGCTCCGTGAGCCTGATGGGCGGCCGGGCCGGGGTGCCCCTCTACGACCGGAACCACGTCACCGGGGCCTCGTCCAGCAGCTCGTCCAGCACCAAGGCTACACTGTATCCACCG
Seq A exon
ATCTTGAACCCGCCGCCGTCCCCCGCCACGGACCCCTCCCTGTACAACGTGGACGTGTTCTACTCTTCCAACATTCCCGCCGCCGCCAGGCCTTACAG
Seq C2 exon
GCCCTACATCATCCGCGGCGTGGCGCCCCCGACCACGCCCTGCAGCACGGACGTGTGCGACAGTGACTACAGCGCCAGCCGCTGGAAGGCCAGCAAGTACTACCTGGATCTGAACTCGGACTCAGACCCCTACCCGCCTCCGCCCACACCCCACAGCCAGTATCTGTCGGCGGAGGACAGCTGCCCGCCGTCGCCCGCCACGGAGAGAAGCTACTTCCACCTTTTCCCGCCCCCGCCGTCCCCCTGCACGGACTCCTCCTGACCTTGGCCGGGCCACCCCGGCCTCTCAGCGCCCCTGTACATAGTTTTAAATATGAACAAAGAAAAAAATATATTTTATGATTTAAAAAAATATAGTTGGATTTTAAAAACAGGAGAAATGTGAACAGTGATGGGGTGGGCAGGACAGGGAAAAACTTTGTACAATGGAGAAAATATTTATAAACCTAATTTTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005903-'31-38,'31-37,33-38=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.277 A=0.182 C2=0.310
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTACGACCGGAACCACGTC
R:
TCCAGGTAGTACTTGCTGGCC
Band lengths:
183-281
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]