GgaEX1033962 @ galGal3
Exon Skipping
Gene
ENSGALG00000006998 | Q5ZKF9_CHICK
Description
NA
Coordinates
chr5:17709532-17711684:+
Coord C1 exon
chr5:17709532-17709671
Coord A exon
chr5:17710471-17710568
Coord C2 exon
chr5:17711223-17711684
Length
98 bp
Sequences
Splice sites
3' ss Seq
ACTGATTTTAATCTTCTTAGATC
3' ss Score
7.21
5' ss Seq
CAGGTACAG
5' ss Score
8.68
Exon sequences
Seq C1 exon
GCATCTCTTGTGGAAAGTCTATGATTAGCTCCATGAGCCTCATGGGAGGGAGCAGTGGTGCCCCCTTATATGACAGAAACCACGTTACTGGAGCCTCTTCTAGTAGCTCATCCAGCACTAAAGCCACTTTCTACCCACAG
Seq A exon
ATCTTGAACCCGCCTCCATCCCCAGCTACTGATCGCTCCCTGTATAATGCAGAGATGTTTTATTCTTCAAACATTCCTTCAACCACAAGATCTTACAG
Seq C2 exon
GCCTTACCTTATACGAGGGACAGCTCCACCCACAACCCCGTGCAGCACAGATGTTTGTGACAGTGACTATACTACTAGTCGATGGAAAGCCAACAAGTACTATATAGATTTAAATTCAGACTCAGACCCTTACCCCCCTCCACCCACACCTCGCAGCCAATACATGTCGGCAGAAGAAAGTTGCCCTCCCTCTCCTGCCACAGAAAGAAGCTATTTTCACCTCTACCCACCTCCACCCTCTCCTTGTACAGACTCCTCATGACCTCAACAGAAGGAACTTTCCCTGTAAATATTTTTAAATATGAACAGATTTTAAATATATATTTTATGATTTAAAGATAAAAAGGGGTGGGAATTAAAAAGGAAAAAAAAAAGAAATGTGAATAAAAATGGGTGGGAGGGATGGGGCTGTGAAAATTGTACAAAGGAAGAATATTTATAAAATTGATTTTTTTTTAACTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006998-'33-28,'33-27,34-28=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.319 A=0.333 C2=0.506
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCATCCAGCACTAAAGCCACT
R:
GGGGGTAAGGGTCTGAGTCTG
Band lengths:
170-268
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]