MmuEX6030306 @ mm10
Exon Skipping
Gene
ENSMUSG00000024913 | Lrp5
Description
low density lipoprotein receptor-related protein 5 [Source:MGI Symbol;Acc:MGI:1278315]
Coordinates
chr19:3584828-3591113:-
Coord C1 exon
chr19:3590974-3591113
Coord A exon
chr19:3586383-3586480
Coord C2 exon
chr19:3584828-3585291
Length
98 bp
Sequences
Splice sites
3' ss Seq
GTCTCCCTCCCTCTCCTCAGATC
3' ss Score
12.21
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
Exon sequences
Seq C1 exon
GCATCCCGTGCAGCAAGTCCGTGATGAGCTCCATGAGCCTGGTGGGGGGGCGCGGCAGTGTGCCCCTCTATGACCGGAATCACGTCACTGGGGCCTCATCCAGCAGCTCGTCCAGCACAAAGGCCACACTATATCCGCCG
Seq A exon
ATCCTGAACCCACCCCCGTCCCCGGCCACAGACCCCTCTCTCTACAACGTGGACGTGTTTTATTCTTCAGGCATCCCGGCCACCGCTAGACCATACAG
Seq C2 exon
GCCCTACGTCATTCGAGGTATGGCACCCCCAACAACACCGTGCAGCACAGATGTGTGTGACAGTGACTACAGCACCAGTCGCTGGAAGAGCAGCAAATACTACCTGGACTTGAATTCGGACTCAGACCCCTACCCCCCCCCGCCCACCCCCCACAGCCAGTACCTATCTGCAGAGGACAGCTGCCCACCCTCACCAGGCACTGAGAGGAGTTACTGCCACCTCTTCCCGCCCCCACCGTCCCCCTGCACGGACTCGTCCTGACCTCGGCCGTCCACCCGGCCCTGCTGCCTCCCTGTAAATATTTTTAAATATGAACAAAGGAAAAATATATTTTATGATTTAAAAAATAAATATAATTGGGATTTTTAACAAGTGAGAAATGTGAGCGGTGAAGGGGTGGGCAGGGCTGGGAAAACTTTGTACAGTGGAGAAAATATTTATAAACTTAATTTTTTAAAACATA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024913_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.266 A=0.273 C2=0.368
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
ENSMUST00000025856fB12296
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCAAGTCCGTGATGAGCTC
R:
GTGTTGTTGGGGGTGCCATAC
Band lengths:
168-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types