BtaEX6023944 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000011761 | LRP6
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1MDE1]
Coordinates
chr5:98097915-98102610:+
Coord C1 exon
chr5:98097915-98098046
Coord A exon
chr5:98100986-98101382
Coord C2 exon
chr5:98102439-98102610
Length
397 bp
Sequences
Splice sites
3' ss Seq
TTTTCCCTTTGTTGTTCTAGGTG
3' ss Score
12.81
5' ss Seq
TGGGTAAGA
5' ss Score
8.91
Exon sequences
Seq C1 exon
CTACAAATCCATGTGGAATTGATAATGGTGGTTGTTCCCACTTGTGTTTGATGTCTCCAGTCAAGCCTTTTTATCAGTGTGCTTGCCCAACTGGGGTCACACTCCTGGAGAACGGAAAAACCTGCAAAGATG
Seq A exon
GTGCCACTGAATTACTGCTTCTAGCCCGAAGGACAGACTTGAGACGCATTTCTTTGGATACACCAGATTTCACTGACATTGTTCTACAGTTAGAAGACATCCGCCATGCCATTGCCATAGATTATGATCCCGTGGAAGGCTATATCTACTGGACTGATGATGAAGTGAGGGCCATACGCCGCTCCTTCATAGATGGATCTGGCAGTCAGTTTGTGGTCACTGCCCAAATTGCCCATCCTGATGGTATTGCTGTTGATTGGGTTGCCCGAAATCTTTATTGGACAGACACTGGCACTGATCGGATAGAAGTGACAAGGCTCAACGGGACCATGAGGAAGATCTTGATTTCAGAGGACTTAGAGGAACCCCGGGCTATTGTGCTAGATCCCATGGTTGG
Seq C2 exon
GTACATGTATTGGACTGACTGGGGAGAAATCCCGAAAATTGAGCGAGCAGCTTTGGATGGTTCTGATCGAGTAGTGTTGGTTAACACTTCTCTTGGTTGGCCAAATGGTTTAGCCTTGGATTATGATGAAGGCAAAATATACTGGGGAGATGCCAAAACAGACAAAATTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011761-'7-14,'7-12,9-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.022 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF146701=FXa_inhibition=WD(100=84.4)
A:
PF0005812=Ldl_recept_b=WD(100=30.8),PF0005812=Ldl_recept_b=WD(100=30.8),PF0005812=Ldl_recept_b=PU(0.1=0.0)
C2:
PF0005812=Ldl_recept_b=WD(100=72.4),PF0005812=Ldl_recept_b=PU(33.3=22.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCATGTGGAATTGATAATGGTGGT
R:
AATTTTGTCTGTTTTGGCATCTCCC
Band lengths:
294-691
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]