GgaEX1033982 @ galGal4
Exon Skipping
Gene
ENSGALG00000011558 | LRP6
Description
low density lipoprotein receptor-related protein 6 [Source:HGNC Symbol;Acc:HGNC:6698]
Coordinates
chr1:71877636-71887163:-
Coord C1 exon
chr1:71887032-71887163
Coord A exon
chr1:71878293-71878689
Coord C2 exon
chr1:71877636-71877807
Length
397 bp
Sequences
Splice sites
3' ss Seq
TTTTTGCCTTTCACATGTAGGTG
3' ss Score
10.18
5' ss Seq
AGGGTAAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
CTACAAACCCATGTGGAATTAATAATGGTGGCTGCTCCCACTTATGTCTGATGTCTCCTACCAAGCCCTCTTATCAGTGTGCATGTCCCACTGGTGTGAAACTTCTTGAGAATGGAAAGACCTGCAAAGATG
Seq A exon
GTGCCACTGAACTGCTGCTTCTAGCCCGCCGGACAGATTTGAGGCGCATTTCCTTAGACACTCCAGATTTTACAGACATCGTTTTGCCTCTGGAGGACATCCGTCATGCCATCGCCATTGACTTTGATCCTCTGGAAGGATACATCTATTGGACTGACGATGAAGTTAGAGCCATCCGTCGCTCATTCGTTGATGGGTCAGGTAGTCAGTTTGTTGTCACAGCACAGATTGCTCATCCTGATGGCATTGCTGTGGACTGGGTTGCCCGAAATCTGTATTGGACTGACACTGGCACAGACCGTATAGAAGTTACAAGGCTTAATGGGACCATGAGAAAAATCTTGATATCAGAAGACCTGGAAGAACCTAGAGCTATTGTGCTGGATCCTATGGTAGG
Seq C2 exon
GTACATGTATTGGACTGACTGGGGAGAAATTCCAAAGATCGAGAGGGCAGCATTAGATGGCTCGGACAGGATTGTGCTGGTGAATACCTCACTTGGGTGGCCAAATGGACTGGCATTGGATTATGCAGAAAGCAAAATATACTGGGGAGATGCAAAAACTGACAAAATAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011558_MULTIEX1-4/4=3-C2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.044 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF146701=FXa_inhibition=WD(100=84.4)
A:
PF0005812=Ldl_recept_b=WD(100=30.4),PF0005812=Ldl_recept_b=WD(100=30.4),PF0005812=Ldl_recept_b=PU(0.1=0.0)
C2:
PF0005812=Ldl_recept_b=WD(100=72.4),PF0005812=Ldl_recept_b=PU(33.3=22.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAAACCCATGTGGAATTAATAATGG
R:
CTCTATTTTGTCAGTTTTTGCATCTC
Band lengths:
302-699
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]