BtaEX6023997 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000011023 | TMEM52B
Description
transmembrane protein 52B [Source:HGNC Symbol;Acc:HGNC:26438]
Coordinates
chr5:100227254-100230453:-
Coord C1 exon
chr5:100230410-100230453
Coord A exon
chr5:100227977-100228015
Coord C2 exon
chr5:100227254-100227420
Length
39 bp
Sequences
Splice sites
3' ss Seq
TTATTATTCTTTCTCCATAGCTG
3' ss Score
11.03
5' ss Seq
ATGGTAAGT
5' ss Score
11.01
Exon sequences
Seq C1 exon
CTTCCTCGGGCAAGATGTGAGGAGAACTGTGTCAGTCCTGAACA
Seq A exon
CTGCCTGACCACAGACTGGGTACATCTCTGGTATATATG
Seq C2 exon
GCTGCTGGTGGTCATCGGGGCACTGCTTCTCCTGTGCGGCCTGACTTCTGTGTGCTTCCGCTGCTGTCTGGATCGCCAGCAAAATGGGGGAGAGGAGGGCCAGCCACCCTATGAAGTGACGGTCATCGCTTTTGACCATGACAGCACTCTCCAGAGTACGGTCACTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011023-'1-2,'1-1,2-2=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.018
Domain overlap (PFAM):
C1:
PF116693=WBP-1=PU(10.7=73.3),PF149791=TMEM52=PU(5.6=53.3)
A:
PF116693=WBP-1=FE(12.6=100),PF149791=TMEM52=FE(9.2=100)
C2:
PF116693=WBP-1=FE(54.4=100),PF149791=TMEM52=FE(39.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGGCAAGATGTGAGGAGAAC
R:
GATCCAGACAGCAGCGGAAG
Band lengths:
112-151
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]