RnoEX6015310 @ rn6
Exon Skipping
Gene
ENSRNOG00000058653 | Tmem52b
Description
transmembrane protein 52B [Source:RGD Symbol;Acc:1586337]
Coordinates
chr4:163269121-163271827:+
Coord C1 exon
chr4:163269121-163269164
Coord A exon
chr4:163271146-163271184
Coord C2 exon
chr4:163271661-163271827
Length
39 bp
Sequences
Splice sites
3' ss Seq
ACTTCATTCTTTGTCCACAGTTG
3' ss Score
10.68
5' ss Seq
ATGGTAAGT
5' ss Score
11.01
Exon sequences
Seq C1 exon
CTTCCTGGGGCCAGAGGCGAGGAGAACTGTGTCAACACTGACCA
Seq A exon
TTGCCTGACTGCCGACTGGGTGCATCTCTGGTATATATG
Seq C2 exon
GCTGCTGGTGGTAGTTGGCGCGCTGCTACTCCTATGTGGTCTGACTTCAGTATGCTTCCGATGCTGCCTGAACCGTCCGGAAAATGGGGAAGATGGGGCCCCGCCGCCTTATGAAGTGACTGTCATTGCTTTTGACCACGACAGCACTCTCCAGAACACCATTACAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000058653-'4-3,'4-2,5-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.018
Domain overlap (PFAM):
C1:
PF149791=TMEM52=PU(5.6=53.3)
A:
PF149791=TMEM52=FE(9.2=100)
C2:
PF149791=TMEM52=FE(39.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCGAGGAGAACTGTGTCAAC
R:
CCCATCTTCCCCATTTTCCGG
Band lengths:
126-165
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]