MmuEX6007365 @ mm10
Exon Skipping
Gene
ENSMUSG00000030160 | Tmem52b
Description
transmembrane protein 52B [Source:MGI Symbol;Acc:MGI:2442838]
Coordinates
chr6:129512555-129516741:+
Coord C1 exon
chr6:129512555-129513104
Coord A exon
chr6:129516044-129516082
Coord C2 exon
chr6:129516575-129516741
Length
39 bp
Sequences
Splice sites
3' ss Seq
ACTTCATTCTTTGTCCACAGTTG
3' ss Score
10.68
5' ss Seq
ATGGTAAGT
5' ss Score
11.01
Exon sequences
Seq C1 exon
GTCATCCAGGAGCCGAGAGTGTGTAACTAGTTTCCTGATGAACACAAGAACACATCTGGTCACTCACAATCTGCCTTTGACCTATTACAGGTCCAAGTCTCTCATTATAGACTGAGGAAAAAAAAATCTAACTCAGAGGACAAATGTGCTCTTCTTGAATGCAGACGAAGAAAAATTAAATACACAGAAAAGTTTGATTGAAGAAAGGAAGTGGAGAGGAAGCCAATGTGGAGACCCCGTGAAGAGAACTCAGGAGGAGGAAACTAAAAGGGAAAAGGAAACCGTAAAATATAAAGCCAGCGGGAACAAGGAGAGGAGATTGATCTATTGCCGAGAAAAAATTCTCTTTAGGAATCCTTCACCACCAAGTTCCACGTGGCACGGAGCATGGGAAGGATACAGCAGATGCAGCCGGCGTGACCTTTCTGGACCAGATGTTCAGCCTAATGACAGCCTGGGCCCAGGTGCTGATGGCCTCTGGCCTGTTTTATTTCATCCAG
Seq A exon
TTGCCTGACTACTGACTGGGTGCATCTCTGGTATATATG
Seq C2 exon
GTTGCTGGTGGTGGTTGGCGCACTGCTTCTCCTGTGTGGCCTGACTTCAGTATGCTTCCGCTGCTGCCTGAGCCGTCCAGAAAACGGGGAAGATGGGGCCCCGCCGCCTTATGAAGTGACTGTCATTGCTTTTGACCATGACAGCACTCTCCAGAGCACCATTACAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030160-'1-4,'1-2,6-4=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF149791=TMEM52=FE(9.2=100)
C2:
PF149791=TMEM52=FE(39.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTCAGCCTAATGACAGCCTG
R:
AAGTCAGGCCACACAGGAGAA
Band lengths:
112-151
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types