MmuEX6007365 @ mm9
Exon Skipping
Gene
ENSMUSG00000030160 | D630042F21Rik
Description
RIKEN cDNA D630042F21 gene [Source:MGI Symbol;Acc:MGI:2442838]
Coordinates
chr6:129464232-129466759:+
Coord C1 exon
chr6:129464232-129464275
Coord A exon
chr6:129466062-129466100
Coord C2 exon
chr6:129466593-129466759
Length
39 bp
Sequences
Splice sites
3' ss Seq
ACTTCATTCTTTGTCCACAGTTG
3' ss Score
10.68
5' ss Seq
ATGGTAAGT
5' ss Score
11.01
Exon sequences
Seq C1 exon
CTTCCTGGGGCCAGGAGTGAGGAGAACTGTGTCAACACTGAACA
Seq A exon
TTGCCTGACTACTGACTGGGTGCATCTCTGGTATATATG
Seq C2 exon
GTTGCTGGTGGTGGTTGGCGCACTGCTTCTCCTGTGTGGCCTGACTTCAGTATGCTTCCGCTGCTGCCTGAGCCGTCCAGAAAACGGGGAAGATGGGGCCCCGCCGCCTTATGAAGTGACTGTCATTGCTTTTGACCATGACAGCACTCTCCAGAGCACCATTACAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030160-'1-2,'1-1,2-2=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF149791=TMEM52=PU(5.6=53.3)
A:
PF149791=TMEM52=FE(9.2=100)
C2:
PF149791=TMEM52=FE(39.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCAGGAGTGAGGAGAACTGT
R:
CGTTTTCTGGACGGCTCAGG
Band lengths:
121-160
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: