HsaEX0009260 @ hg19
Exon Skipping
Gene
ENSG00000165685 | C12orf59
Description
chromosome 12 open reading frame 59 [Source:HGNC Symbol;Acc:26438]
Coordinates
chr12:10335149-10339188:+
Coord C1 exon
chr12:10335149-10335192
Coord A exon
chr12:10337929-10337967
Coord C2 exon
chr12:10339019-10339188
Length
39 bp
Sequences
Splice sites
3' ss Seq
ACTTTATTCTTTCTTTATAGTTG
3' ss Score
9.32
5' ss Seq
ATGGTAAGT
5' ss Score
11.01
Exon sequences
Seq C1 exon
CTTTCTGGGACGAGATGTGAGGAAAACTGTGGTAATCCTGAACA
Seq A exon
TTGCCTGACCACAGACTGGGTACATCTCTGGTATATATG
Seq C2 exon
GTTGCTAGTGGTAATTGGCGCGCTGCTTCTCCTGTGTGGCCTGACGTCCCTGTGCTTCCGCTGCTGCTGTCTGAGCCGCCAGCAAAATGGGGAAGATGGGGGCCCACCACCCTGTGAAGTGACCGTCATTGCTTTCGATCACGACAGCACTCTCCAGAGCACTATCACAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000165685_MULTIEX1-2/3=1-3
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF149791=TMEM52=PU(12.1=53.3)
A:
PF149791=TMEM52=FE(19.7=100)
C2:
PF149791=TMEM52=FE(40.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGGGACGAGATGTGAGGAA
R:
TTTTGCTGGCGGCTCAGAC
Band lengths:
128-167
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)