BtaEX6024531 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000012265 | VWF
Description
Bos taurus von Willebrand factor (VWF), mRNA. [Source:RefSeq mRNA;Acc:NM_001205308]
Coordinates
chr5:104715072-104716806:+
Coord C1 exon
chr5:104715072-104715252
Coord A exon
chr5:104716172-104716212
Coord C2 exon
chr5:104716690-104716806
Length
41 bp
Sequences
Splice sites
3' ss Seq
CTGCGCCTGTCTCTCCCCAGAGC
3' ss Score
12.71
5' ss Seq
GGGGTGAGC
5' ss Score
5.97
Exon sequences
Seq C1 exon
GTTGGCTCTCACTGGGCCTCCCCCGAGAACCCCTGCCTCATCCACGAGTGCGTCCGAGTCGAGGAGGAGGTCTTCGTGCAGCAGAGGAATGTCTCCTGCCCGCAGCTGAATGTCCCCGTCTGCCCGTTGGGCTTCCAGCTGCGCTGTCAGACCTTGGGCTGTTGCCCCACCTGTCGCTGCG
Seq A exon
AGCCCGTGCAGGCTTGCGTCCTCAACGGCACCATCATCGGG
Seq C2 exon
CCCGGGAAGACTGTGATGGTTGACGCATGCATGACCTGCCGCTGCCACGTCCAGGCAGGGGTCATCTCTGGATTCAAGCTGGAGTGCAGGAAGACCACCTGCCAGGCCTGCCCTGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012265-'53-51,'53-50,55-51=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.016 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0009313=VWC=PU(12.7=57.1)
C2:
PF0009313=VWC=FE(60.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCAGCAGAGGAATGTCTCC
R:
TCATGCATGCGTCAACCATCA
Band lengths:
140-181
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]