DreEX0084726 @ danRer10
Exon Skipping
Gene
ENSDARG00000077231 | vwf
Description
von Willebrand factor [Source:ZFIN;Acc:ZDB-GENE-070103-1]
Coordinates
chr18:7257790-7260684:+
Coord C1 exon
chr18:7257790-7257973
Coord A exon
chr18:7260436-7260476
Coord C2 exon
chr18:7260577-7260684
Length
41 bp
Sequences
Splice sites
3' ss Seq
CTCTCCCTCTCTCTCCGCAGTCC
3' ss Score
13.85
5' ss Seq
GCGGTAAAG
5' ss Score
5.69
Exon sequences
Seq C1 exon
GTCGGAGAGCAGTGGGTGTCTGCGAACGACAGATGTGTGTGGAGCGAATGTGTGCAAGTGAATGAGGAAGTGTTCATCCAGCATACAAACGTGTCCTGCCATCACATGGACACGCCGGCCTGTCCGCTGGGCACTGAGCTCCAGTGCAATACAGTGGACGACTGCTGCCCATCCTGCCACTGTG
Seq A exon
TCCCAATGAATGCCTGCGTGCTGAATCAAACTGTTATTGCG
Seq C2 exon
GCTGGAGAGCGAGTGATGCTGGATGTGTGCACACACTGCGAGTGTGTGGGAGATAAGAGGAGTTATCGGCTCTCTTGCAGGAAGATGAGCTGCTCCCCCTGCTCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000077231-'51-51,'51-50,53-51
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0009313=VWC=PU(13.3=57.1)
C2:
PF0009313=VWC=FE(58.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCATACAAACGTGTCCTGCC
R:
TGCACACATCCAGCATCACTC
Band lengths:
136-177
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]