MmuEX6007109 @ mm10
Exon Skipping
Gene
ENSMUSG00000001930 | Vwf
Description
Von Willebrand factor [Source:MGI Symbol;Acc:MGI:98941]
Coordinates
chr6:125677891-125679360:+
Coord C1 exon
chr6:125677891-125678071
Coord A exon
chr6:125678764-125678804
Coord C2 exon
chr6:125679244-125679360
Length
41 bp
Sequences
Splice sites
3' ss Seq
ATGTTGCTTTGTTCCCCCAGAGC
3' ss Score
10.25
5' ss Seq
GGGGTAGGT
5' ss Score
6.59
Exon sequences
Seq C1 exon
GTTGGATCTCGGTGGGCTGTTCCTGAGAACCCCTGCCTCGTCAACGAGTGTGTCCGCGTGGAGGATGCAGTGTTTGTGCAGCAGAGGAACATCTCCTGCCCACAGCTGGCTGTCCCTACCTGTCCCACAGGCTTCCAACTGAACTGTGAGACCTCAGAGTGCTGTCCTAGCTGCCACTGTG
Seq A exon
AGCCTGTGGAGGCCTGCCTGCTCAATGGCACCATCATTGGG
Seq C2 exon
CCCGGGAAGAGTGTGATGGTTGACCTATGCACGACCTGCCGCTGCATCGTGCAGACAGACGCCATCTCCAGATTCAAGCTGGAGTGCAGGAAGACTACCTGTGAGGCCTGCCCCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000001930-'78-86,'78-83,79-86
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0009313=VWC=PU(12.7=57.1)
C2:
PF0009313=VWC=FE(60.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCAGCAGAGGAACATCTCC
R:
CAGGTCGTGCATAGGTCAACC
Band lengths:
144-185
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types