GgaEX1063597 @ galGal3
Exon Skipping
Gene
ENSGALG00000017272 | VWF
Description
NA
Coordinates
chr1:76577852-76584038:-
Coord C1 exon
chr1:76583855-76584038
Coord A exon
chr1:76582875-76582915
Coord C2 exon
chr1:76577852-76577968
Length
41 bp
Sequences
Splice sites
3' ss Seq
AATATTATCATCTCTTTCAGTAC
3' ss Score
7.02
5' ss Seq
GGGGTAAGA
5' ss Score
7.83
Exon sequences
Seq C1 exon
GTTGGCACGGAGTGGCGATCTCCCTTCAATAGGTGCATAATTAATGAGTGTGTCCGAGTGAATGATGAGGTTTTTGTGCAGCAAAAGAATCTGTCCTGCTCTCAGATGGATGTACCTGACTGTCCAGATGGAACTGAATTACGCTGTGACCAAGTAATAGACTGCTGTCCTTCGTGTAGATGTG
Seq A exon
TACCTGTGAATGGTTGTCCTTTGAATGGCACTCTTATTGGG
Seq C2 exon
CCATGGAAACGCATGATGGTGGATCAATGCACAACATGCATCTGTTCGCTCCAGTCAGTGTCTTCTCGGAGATACAGCCTCACATGTACAAAATTCAGCTGTGAACCATGCCCAACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000017272-'47-55,'47-54,48-55=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCCTGCTCTCAGATGGATGT
R:
CTGGAGCGAACAGATGCATGT
Band lengths:
147-188
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]