RnoEX6015157 @ rn6
Exon Skipping
Gene
ENSRNOG00000019689 | Vwf
Description
von Willebrand factor [Source:RGD Symbol;Acc:621759]
Coordinates
chr4:158208453-158209928:+
Coord C1 exon
chr4:158208453-158208633
Coord A exon
chr4:158209328-158209368
Coord C2 exon
chr4:158209812-158209928
Length
41 bp
Sequences
Splice sites
3' ss Seq
CGTGTTCCTTTGTTTCCCAGAGC
3' ss Score
9.79
5' ss Seq
GGGGTAAGT
5' ss Score
9.65
Exon sequences
Seq C1 exon
GTTGGGTCTCAGTGGGCTGTTCCTGAGAACCCCTGCCTCATCAATGAGTGTGTCCGAGTGGAGGACGCAGTGTTTGTGCAGCAGAGGAACATCTCCTGCCCACAGCTGGCTGTCCCTACCTGTCCCACGGGCTTCCAGCTGAACTGTGAGACCTCAGCATGCTGTCCCAGCTGTCACTGTG
Seq A exon
AGCCTGTGGAGGCCTGCCTGCTCAATGGCACCATCATTGGG
Seq C2 exon
CCCGGGAAGAGTGTGATGGTTGACTTATGCACGACCTGCCGTTGCATTGTTCAGAGAGGAGCCATCTTCAGATTCAAGCTGGAGTGCAGAAAGACCACCTGTGAGGCCTGCCCTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019689-'59-53,'59-51,60-53=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0009313=VWC=PU(12.7=57.1)
C2:
PF0009313=VWC=FE(60.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGAGACCTCAGCATGCTGTC
R:
GGTGGTCTTTCTGCACTCCAG
Band lengths:
135-176
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]