BtaEX6024533 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000012265 | VWF
Description
Bos taurus von Willebrand factor (VWF), mRNA. [Source:RefSeq mRNA;Acc:NM_001205308]
Coordinates
chr5:104709595-104715252:+
Coord C1 exon
chr5:104709595-104709744
Coord A exon
chr5:104712951-104713061
Coord C2 exon
chr5:104715072-104715252
Length
111 bp
Sequences
Splice sites
3' ss Seq
CCGTCCTTGTGTGTTTTCAGGGC
3' ss Score
11.08
5' ss Seq
AGTGTAGGT
5' ss Score
3.31
Exon sequences
Seq C1 exon
GTGTGCGTCCACCGAGGCACCATCTACCCCGTGGGCCAGTTCTGGGAGGAGGGCTGTGATACCTGCACCTGCACGGATCTGGAGGATGCTGTGATGGGCCTGCGCGTGGCCCAGTGCTCCCAGAAACCCTGCGCGGACATCTGCCGGCCG
Seq A exon
GGCTTCACCTACGTCCTCCGCGAGGGAGAGTGCTGTGGAAGGTGCCTGCCGTCGGCCTGCGAGGTGGTGACCGGCTCCCCGCGGGGGGACTCCCAGACCCAGTGGAAGAGT
Seq C2 exon
GTTGGCTCTCACTGGGCCTCCCCCGAGAACCCCTGCCTCATCCACGAGTGCGTCCGAGTCGAGGAGGAGGTCTTCGTGCAGCAGAGGAATGTCTCCTGCCCGCAGCTGAATGTCCCCGTCTGCCCGTTGGGCTTCCAGCTGCGCTGTCAGACCTTGGGCTGTTGCCCCACCTGTCGCTGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012265-'50-49,'50-48,52-49=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.054 C2=0.016
Domain overlap (PFAM):
C1:
PF0009313=VWC=PU(75.0=96.0)
A:
PF0009313=VWC=PD(21.9=37.8)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGGATCTGGAGGATGCTGTG
R:
CAACAGCCCAAGGTCTGACAG
Band lengths:
242-353
Functional annotations
There are 1 annotated functions for this event
PMID: 2447074
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: competition binding. ELM ID: ELMI000113; ELM sequence: RGD; Overlap: FULL
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]