DreEX6064138 @ danRer10
Exon Skipping
Gene
ENSDARG00000077231 | vwf
Description
von Willebrand factor [Source:ZFIN;Acc:ZDB-GENE-070103-1]
Coordinates
chr18:7254385-7257973:+
Coord C1 exon
chr18:7254385-7254534
Coord A exon
chr18:7257622-7257705
Coord C2 exon
chr18:7257790-7257973
Length
84 bp
Sequences
Splice sites
3' ss Seq
ATTGTTTCTTGTGTATAAAGGGA
3' ss Score
5.01
5' ss Seq
CAGGCGAGT
5' ss Score
2.92
Exon sequences
Seq C1 exon
GTGTGTGTGGTGGACGCTGTGGTGTACCAGGTGGGCAGCAGGTGGGAGGAGAAGTGTAAAACTTGCAGATGCACCGAGCAGACGGACGGACAGACCGGCCTGCACATCGCTCAGTGTGTGGACCCCGTCTGCAACCAGATCTGCCCTGTG
Seq A exon
GGAAGCACATACTCTCATTCAGGAGGCGAGTGTTGCGGTCACTGCCGTAAATCCAGCTGTGAGGAAGGAGGACTGTTGAGGCAG
Seq C2 exon
GTCGGAGAGCAGTGGGTGTCTGCGAACGACAGATGTGTGTGGAGCGAATGTGTGCAAGTGAATGAGGAAGTGTTCATCCAGCATACAAACGTGTCCTGCCATCACATGGACACGCCGGCCTGTCCGCTGGGCACTGAGCTCCAGTGCAATACAGTGGACGACTGCTGCCCATCCTGCCACTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000077231-'46-49,'46-48,49-49=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0009313=VWC=PU(75.0=96.0)
A:
PF0009313=VWC=PD(21.9=50.0)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGGTGGGAGGAGAAGTGTA
R:
CACACATTCGCTCCACACACA
Band lengths:
167-251
Functional annotations
There are 1 annotated functions for this event
PMID: 2447074
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: competition binding. ELM ID: ELMI000113; ELM sequence: RGD; Overlap: FULL
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]