GgaEX6003196 @ galGal3
Exon Skipping
Gene
ENSGALG00000017272 | VWF
Description
NA
Coordinates
chr1:76583855-76590444:-
Coord C1 exon
chr1:76590295-76590444
Coord A exon
chr1:76585992-76586102
Coord C2 exon
chr1:76583855-76584038
Length
111 bp
Sequences
Splice sites
3' ss Seq
GTTTTTCTTTTCTCCCACAGGGA
3' ss Score
12.67
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
Exon sequences
Seq C1 exon
GTGTGTGTGCACAACAACATTGTCTATCCCATCGGGAAAACCTGGAAAAATGGTTGCAAGGAATGTTCTTGCACTAGTATGAGAGATGATATTACAGGATTTCAGATGATGGAATGTCATGACAAAATATGTAACACATTCTGCTCTCGG
Seq A exon
GGATATAAGTATATTGTTCAAGACGGGGAGTGCTGTGGGCGCTGCCAGAAAACTGCCTGTGAGGAGCAACCATTCTGGTCTCGGGGTGATGCAGATCCTCATTTATATGAG
Seq C2 exon
GTTGGCACGGAGTGGCGATCTCCCTTCAATAGGTGCATAATTAATGAGTGTGTCCGAGTGAATGATGAGGTTTTTGTGCAGCAAAAGAATCTGTCCTGCTCTCAGATGGATGTACCTGACTGTCCAGATGGAACTGAATTACGCTGTGACCAAGTAATAGACTGCTGTCCTTCGTGTAGATGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000017272-'45-53,'45-52,46-53=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0009313=VWC=PU(75.0=96.0)
A:
PF0009313=VWC=PD(21.9=37.8)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGGGAAAACCTGGAAAAATGGT
R:
AGTTCCATCTGGACAGTCAGGT
Band lengths:
254-365
Functional annotations
There are 1 annotated functions for this event
PMID: 2447074
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: competition binding. ELM ID: ELMI000113; ELM sequence: RGD; Overlap: FULL
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]