MmuEX6007111 @ mm10
Exon Skipping
Gene
ENSMUSG00000001930 | Vwf
Description
Von Willebrand factor [Source:MGI Symbol;Acc:MGI:98941]
Coordinates
chr6:125667471-125678071:+
Coord C1 exon
chr6:125667471-125667620
Coord A exon
chr6:125673846-125673956
Coord C2 exon
chr6:125677891-125678071
Length
111 bp
Sequences
Splice sites
3' ss Seq
TCTTTGTTTTTGTTTTTCAGGGT
3' ss Score
12.35
5' ss Seq
AGTGTAGGT
5' ss Score
3.31
Exon sequences
Seq C1 exon
GTTTGTGTCCACCGAGGCACCGTCTACCCTGTGGGCCAGTTCTGGGAGGAGGGCTGTGACACGTGCACCTGTACGGACATGGAGGATACTGTCGTGGGCCTGCGTGTGGTCCAGTGCTCTCAAAGGCCCTGTGAAGACAGCTGTCAGCCA
Seq A exon
GGTTTTTCTTATGTTCTCCACGAAGGCGAGTGCTGTGGAAGGTGCCTGCCCTCTGCTTGCAAGGTGGTGGCTGGCTCACTGCGGGGCGATTCCCACTCTTCCTGGAAAAGT
Seq C2 exon
GTTGGATCTCGGTGGGCTGTTCCTGAGAACCCCTGCCTCGTCAACGAGTGTGTCCGCGTGGAGGATGCAGTGTTTGTGCAGCAGAGGAACATCTCCTGCCCACAGCTGGCTGTCCCTACCTGTCCCACAGGCTTCCAACTGAACTGTGAGACCTCAGAGTGCTGTCCTAGCTGCCACTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000001930-'76-82,'76-80,77-82
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0009313=VWC=PU(75.0=96.0)
A:
PF0009313=VWC=PD(21.9=37.8)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCTGTACGGACATGGAGGA
R:
AGGACAGCACTCTGAGGTCTC
Band lengths:
253-364
Functional annotations
There are 1 annotated functions for this event
PMID: 2447074
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: competition binding. ELM ID: ELMI000113; ELM sequence: RGD; Overlap: FULL
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types