RnoEX6015159 @ rn6
Exon Skipping
Gene
ENSRNOG00000019689 | Vwf
Description
von Willebrand factor [Source:RGD Symbol;Acc:621759]
Coordinates
chr4:158200374-158208633:+
Coord C1 exon
chr4:158200374-158200523
Coord A exon
chr4:158204493-158204600
Coord C2 exon
chr4:158208453-158208633
Length
108 bp
Sequences
Splice sites
3' ss Seq
CTGCTGTTTTTATTTTTCAGGGT
3' ss Score
12.16
5' ss Seq
AGCGTAGGT
5' ss Score
5
Exon sequences
Seq C1 exon
GTTTGTGTCCACCGAGGCACCGTCTACCCTGTGGGCCAGTTCTGGGAGGAGGGCTGTGACACATGCACCTGCACCGACATGGAGGATACTGTTGTGGGCCTGCGTGTGGCTCAATGCTCTCAGAAGCCCTGTGAAGACAGCTGTCAGCCA
Seq A exon
GGTTTTTCTTATGTTCTCCACGAAGGGGAGTGCTGTGGAAAGTGCCTGCCGTCTGCTTGCAAGGTGGCTGGCTCACCGAGGGGTGATTCCCTCTCTTCCTGGAAGAGC
Seq C2 exon
GTTGGGTCTCAGTGGGCTGTTCCTGAGAACCCCTGCCTCATCAATGAGTGTGTCCGAGTGGAGGACGCAGTGTTTGTGCAGCAGAGGAACATCTCCTGCCCACAGCTGGCTGTCCCTACCTGTCCCACGGGCTTCCAGCTGAACTGTGAGACCTCAGCATGCTGTCCCAGCTGTCACTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019689-'56-50,'56-48,58-50=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0009313=VWC=PU(75.0=96.0)
A:
PF0009313=VWC=PD(21.9=38.9)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCACCGACATGGAGGATAC
R:
GACAGCATGCTGAGGTCTCAC
Band lengths:
248-356
Functional annotations
There are 1 annotated functions for this event
PMID: 2447074
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: competition binding. ELM ID: ELMI000113; ELM sequence: RGD; Overlap: FULL
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]