BtaEX6024536 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000012265 | VWF
Description
Bos taurus von Willebrand factor (VWF), mRNA. [Source:RefSeq mRNA;Acc:NM_001205308]
Coordinates
chr5:104704210-104708199:+
Coord C1 exon
chr5:104704210-104704284
Coord A exon
chr5:104706511-104706615
Coord C2 exon
chr5:104707994-104708199
Length
105 bp
Sequences
Splice sites
3' ss Seq
ATCCCTCCTCTGGCCCTCAGTGT
3' ss Score
8.04
5' ss Seq
GTGGTGAGT
5' ss Score
8.95
Exon sequences
Seq C1 exon
TGCCCACGTGCGGCCCATGTGAGGTGGCCCGGCTCCGGCAGAGCACGCAGCAGTGCTGTCCCGAGTACGAGTGTG
Seq A exon
TGTGTGACTTGGTGAGCTGTGACGTGCCCCCGGTGCCTAACTGCGAAGACGGCCTCCAGCCGGTGCTGGCCAATCCTGGCGAGTGCAGACCCAGCTTCACCTGTG
Seq C2 exon
TCTGCAGGAAGGAGGAATGCCCGAAGGGGTCCCCACCCTCCTGCCCCCCGCACCGGATGCCCGCCCTTCGGAAGACCCGGTGCTGTGACGAGTACGAGTGTGCTTGCAACTGCACCAACTCCACGGTGAGCTGCCCGCTGGGGTACCTGGCCTCCACCATCACCAACGACTGCAGCTGCACCACCACCACCTGCCTCCCCGACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012265-'47-46,'47-45,48-46=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0009313=VWC=FE(33.8=100)
A:
PF0009313=VWC=PD(1.4=2.8)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCGGCCCATGTGAGGTG
R:
CTGCAGTCGTTGGTGATGGTG
Band lengths:
242-347
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]