GgaEX1063604 @ galGal3
Exon Skipping
Gene
ENSGALG00000017272 | VWF
Description
NA
Coordinates
chr1:76591797-76593165:-
Coord C1 exon
chr1:76593091-76593165
Coord A exon
chr1:76592472-76592576
Coord C2 exon
chr1:76591797-76592002
Length
105 bp
Sequences
Splice sites
3' ss Seq
CTCTCAATTTCTCTTCTTAGTCT
3' ss Score
8.58
5' ss Seq
GTGGTAAGA
5' ss Score
8.24
Exon sequences
Seq C1 exon
CTGTGCAATGTGGCCCCTGTGAAGTTCCTCGTCTGCGCAGGGACCCTAACCAGTGCTGCCCTGTGTATGAGTGTG
Seq A exon
TCTGTGATCTAGTTTCTTGTGATTTGCCTCCTGTCCCTGACTGTGAGTTTGGCCTGCAGCTTGCTCTGACCAATCCTGGAGAATGCAGACCAAACTATACATGTG
Seq C2 exon
CTTGTAACAGAGAAGCATGCAGTTTAGTTCAAAGACCTTTCTGCCCACCCCATCGGGAGCTGACTGTTAAGAAGACAGAGTGCTGCGATAAATATGAGTGTACTTGCAGCTGCAGTAACTCAACAGTGAGCTGTCCTCTTGGGTATTTATCCAGATCTCTCACCAATGACTGTGGCTGCATATCTACTACTTGTGTTCCAGACATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000017272-'42-50,'42-49,43-50=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0009313=VWC=FE(33.8=100)
A:
PF0009313=VWC=PD(1.4=2.8)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAATGTGGCCCCTGTGAAGTT
R:
ATGCAGCCACAGTCATTGGTG
Band lengths:
251-356
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]