MmuEX6007113 @ mm9
Exon Skipping
Gene
ENSMUSG00000001930 | Vwf
Description
Von Willebrand factor homolog [Source:MGI Symbol;Acc:MGI:98941]
Coordinates
chr6:125613522-125616802:+
Coord C1 exon
chr6:125613522-125613596
Coord A exon
chr6:125615112-125615216
Coord C2 exon
chr6:125616597-125616802
Length
105 bp
Sequences
Splice sites
3' ss Seq
CTCTTTTTCTTGACCCCCAGTGT
3' ss Score
8.69
5' ss Seq
GTGGTAAGG
5' ss Score
8.37
Exon sequences
Seq C1 exon
CTCCCACGTGTGGCCCATGTGAAGTGGCTCGCCTCAAGCAGAGCACAAACCTGTGCTGCCCAGAGTATGAGTGTG
Seq A exon
TGTGTGACCTGTTCAACTGCAACTTGCCTCCAGTGCCTCCGTGTGAAGGAGGGCTCCAGCCAACCCTGACCAACCCTGGAGAATGCAGACCCACCTTTACCTGTG
Seq C2 exon
CCTGCAGGAAAGAAGAGTGCAAAAGAGTGTCCCCACCCTCCTGCCCCCCTCACCGGACACCCACTCTCCGGAAGACCCAGTGCTGTGATGAATACGAGTGTGCTTGCAGCTGTGTCAACTCCACGCTGAGCTGCCCACTTGGCTACCTGGCCTCAGCCACTACCAATGACTGTGGCTGCACCACGACCACCTGTCTCCCTGACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000001930-'55-54,'55-53,57-54=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0009313=VWC=FE(35.2=100)
A:
PF0009313=VWC=PD(1.4=2.8)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTGGCCCATGTGAAGTGG
R:
GTGCAGCCACAGTCATTGGTA
Band lengths:
249-354
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: