MmuEX6007113 @ mm10
Exon Skipping
Gene
ENSMUSG00000001930 | Vwf
Description
Von Willebrand factor [Source:MGI Symbol;Acc:MGI:98941]
Coordinates
chr6:125663504-125666784:+
Coord C1 exon
chr6:125663504-125663578
Coord A exon
chr6:125665094-125665198
Coord C2 exon
chr6:125666579-125666784
Length
105 bp
Sequences
Splice sites
3' ss Seq
CTCTTTTTCTTGACCCCCAGTGT
3' ss Score
8.69
5' ss Seq
GTGGTAAGG
5' ss Score
8.37
Exon sequences
Seq C1 exon
CTCCCACGTGTGGCCCATGTGAAGTGGCTCGCCTCAAGCAGAGCACAAACCTGTGCTGCCCAGAGTATGAGTGTG
Seq A exon
TGTGTGACCTGTTCAACTGCAACTTGCCTCCAGTGCCTCCGTGTGAAGGAGGGCTCCAGCCAACCCTGACCAACCCTGGAGAATGCAGACCCACCTTTACCTGTG
Seq C2 exon
CCTGCAGGAAAGAAGAGTGCAAAAGAGTGTCCCCACCCTCCTGCCCCCCTCACCGGACACCCACTCTCCGGAAGACCCAGTGCTGTGATGAATACGAGTGTGCTTGCAGCTGTGTCAACTCCACGCTGAGCTGCCCACTTGGCTACCTGGCCTCAGCCACTACCAATGACTGTGGCTGCACCACGACCACCTGTCTCCCTGACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000001930-'71-80,'71-71,73-80=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0009313=VWC=FE(35.2=100)
A:
PF0009313=VWC=PD(1.4=2.8)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTGGCCCATGTGAAGTGG
R:
GTGCAGCCACAGTCATTGGTA
Band lengths:
249-354
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types