RnoEX6015161 @ rn6
Exon Skipping
Gene
ENSRNOG00000019689 | Vwf
Description
von Willebrand factor [Source:RGD Symbol;Acc:621759]
Coordinates
chr4:158196533-158199714:+
Coord C1 exon
chr4:158196533-158196607
Coord A exon
chr4:158198104-158198208
Coord C2 exon
chr4:158199509-158199714
Length
105 bp
Sequences
Splice sites
3' ss Seq
TCTTTTTTCTTGAACCTCAGTGT
3' ss Score
6.92
5' ss Seq
GTGGTAAGG
5' ss Score
8.37
Exon sequences
Seq C1 exon
CTCCCACCTGTGGCCCTTGTGAAGTGGCTCGTCTCAAGCAGAGTGCAGACCTGTGCTGCCCAGAGTATGAGTGTG
Seq A exon
TGTGTGACCTGGTCAACTGCAACTTGCCACCAGTGCCTCCGTGTGAAGGAGGACTCCAGCCAACCCTGACCAACCCTGGAGAATGCAGACCCACCTTTACCTGTG
Seq C2 exon
CCTGCAGGAAAGAAGAGTGCAAAAGAGTGTCCCCACCCTCCTGCCCCCCTCACCGGACACCCACCCTTCGGAAGACCCAGTGCTGTGATGAGTATGAATGCACTTGCAGCTGTGTCAACTCCACGCTGAGCTGCCCACTTGGCTACCTGGCCTCGGCCACCACCAATGACTGTGGCTGCACCACAACCACCTGTCTCCCTGACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019689-'52-46,'52-45,54-46=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0009313=VWC=FE(35.2=100)
A:
PF0009313=VWC=PD(1.4=2.8)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGTGGCTCGTCTCAAGCAG
R:
TCAGGGAGACAGGTGGTTGTG
Band lengths:
257-362
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]